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Simplify pg_mcv_list (de)serialization

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The serialization format of multivariate MCV lists included alignment in
order to allow direct access to part of the serialized data, but despite
multiple fixes (see for example commits d85e0f366a and ea4e1c0e8f) this
proved to be problematic.

This commit abandons alignment in the serialized format, and just copies
everything during deserialization.  We now also track amount of memory
needed after deserialization (including alignment), which allows us to
deserialize the MCV list in a single pass.

Bump catversion, as this affects contents of pg_statistic_ext_data.

Backpatch to 12, where multi-column MCV lists were introduced.

Author: Tomas Vondra
Reviewed-by: Tom Lane
Discussion: https://postgr.es/m/2201.1561521148@sss.pgh.pa.us
pull/47/head
Tomas Vondra 7 years ago
parent 4d66285adc
commit 08aa131c7a
3 changed files with 183 additions and 111 deletions
Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL
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  1. 291
      src/backend/statistics/mcv.c
  2. 2
      src/include/catalog/catversion.h
  3. 1
      src/include/statistics/extended_stats_internal.h

291
src/backend/statistics/mcv.c
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@ -40,27 +40,20 @@
* stored in a separate array (deduplicated, to minimize the size), and
* so the serialized items only store uint16 indexes into that array.
*
* Each serialized item store (in this order):
* Each serialized item stores (in this order):
*
* - indexes to values (ndim * sizeof(uint16))
* - null flags (ndim * sizeof(bool))
* - frequency (sizeof(double))
* - base_frequency (sizeof(double))
*
* There is no alignment padding within an MCV item.
* So in total each MCV item requires this many bytes:
*
* ndim * (sizeof(uint16) + sizeof(bool)) + 2 * sizeof(double)
*/
#define ITEM_SIZE(ndims) \
MAXALIGN((ndims) * (sizeof(uint16) + sizeof(bool)) + 2 * sizeof(double))
/*
* Macros for convenient access to parts of a serialized MCV item.
*/
#define ITEM_INDEXES(item) ((uint16 *) (item))
#define ITEM_NULLS(item,ndims) ((bool *) (ITEM_INDEXES(item) + (ndims)))
#define ITEM_FREQUENCY(item,ndims) ((double *) (ITEM_NULLS(item, ndims) + (ndims)))
#define ITEM_BASE_FREQUENCY(item,ndims) ((double *) (ITEM_FREQUENCY(item, ndims) + 1))
((ndims) * (sizeof(uint16) + sizeof(bool)) + 2 * sizeof(double))
/*
* Used to compute size of serialized MCV list representation.
@ -68,10 +61,16 @@
#define MinSizeOfMCVList \
(VARHDRSZ + sizeof(uint32) * 3 + sizeof(AttrNumber))
/*
* Size of the serialized MCV list, excluding the space needed for
* deduplicated per-dimension values. The macro is meant to be used
* when it's not yet safe to access the serialized info about amount
* of data for each column.
*/
#define SizeOfMCVList(ndims,nitems) \
(MAXALIGN(MinSizeOfMCVList + sizeof(Oid) * (ndims)) + \
MAXALIGN((ndims) * sizeof(DimensionInfo)) + \
MAXALIGN((nitems) * ITEM_SIZE(ndims)))
((MinSizeOfMCVList + sizeof(Oid) * (ndims)) + \
((ndims) * sizeof(DimensionInfo)) + \
((nitems) * ITEM_SIZE(ndims)))
static MultiSortSupport build_mss(VacAttrStats **stats, int numattrs);
@ -605,19 +604,16 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
int i;
int dim;
int ndims = mcvlist->ndimensions;
int itemsize = ITEM_SIZE(ndims);
SortSupport ssup;
DimensionInfo *info;
Size total_length;
/* allocate the item just once */
char *item = palloc0(itemsize);
/* serialized items (indexes into arrays, etc.) */
char *raw;
bytea *raw;
char *ptr;
char *endptr PG_USED_FOR_ASSERTS_ONLY;
/* values per dimension (and number of non-NULL values) */
Datum **values = (Datum **) palloc0(sizeof(Datum *) * ndims);
@ -711,33 +707,80 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
*/
info[dim].nvalues = ndistinct;
if (info[dim].typlen > 0) /* fixed-length data types */
if (info[dim].typbyval) /* by-value data types */
{
info[dim].nbytes = info[dim].nvalues * info[dim].typlen;
/*
* We copy the data into the MCV item during deserialization, so
* we don't need to allocate any extra space.
*/
info[dim].nbytes_aligned = 0;
}
else if (info[dim].typlen > 0) /* fixed-length by-ref */
{
/*
* We don't care about alignment in the serialized data, so we
* pack the data as much as possible. But we also track how much
* data will be needed after deserialization, and in that case
* we need to account for alignment of each item.
*
* Note: As the items are fixed-length, we could easily compute
* this during deserialization, but we do it here anyway.
*/
info[dim].nbytes = info[dim].nvalues * info[dim].typlen;
info[dim].nbytes_aligned = info[dim].nvalues * MAXALIGN(info[dim].typlen);
}
else if (info[dim].typlen == -1) /* varlena */
{
info[dim].nbytes = 0;
info[dim].nbytes_aligned = 0;
for (i = 0; i < info[dim].nvalues; i++)
{
Size len;
/*
* For varlena values, we detoast the values and store the
* length and data separately. We don't bother with alignment
* here, which means that during deserialization we need to
* copy the fields and only access the copies.
*/
values[dim][i] = PointerGetDatum(PG_DETOAST_DATUM(values[dim][i]));
len = VARSIZE_ANY(values[dim][i]);
info[dim].nbytes += MAXALIGN(len);
/* serialized length (uint32 length + data) */
len = VARSIZE_ANY_EXHDR(values[dim][i]);
info[dim].nbytes += sizeof(uint32); /* length */
info[dim].nbytes += len; /* value (no header) */
/*
* During deserialization we'll build regular varlena values
* with full headers, and we need to align them properly.
*/
info[dim].nbytes_aligned += MAXALIGN(VARHDRSZ + len);
}
}
else if (info[dim].typlen == -2) /* cstring */
{
info[dim].nbytes = 0;
info[dim].nbytes_aligned = 0;
for (i = 0; i < info[dim].nvalues; i++)
{
Size len;
/* c-strings include terminator, so +1 byte */
values[dim][i] = PointerGetDatum(PG_DETOAST_DATUM(values[dim][i]));
/*
* For cstring, we do similar thing as for varlena - first we
* store the length as uint32 and then the data. We don't care
* about alignment, which means that during deserialization we
* need to copy the fields and only access the copies.
*/
/* c-strings include terminator, so +1 byte */
len = strlen(DatumGetCString(values[dim][i])) + 1;
info[dim].nbytes += MAXALIGN(len);
info[dim].nbytes += sizeof(uint32); /* length */
info[dim].nbytes += len; /* value */
/* space needed for properly aligned deserialized copies */
info[dim].nbytes_aligned += MAXALIGN(len);
}
}
@ -749,34 +792,33 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
* Now we can finally compute how much space we'll actually need for the
* whole serialized MCV list (varlena header, MCV header, dimension info
* for each attribute, deduplicated values and items).
*
* The header fields are copied one by one, so that we don't need any
* explicit alignment (we copy them while deserializing). All fields after
* this need to be properly aligned, for direct access.
*/
total_length = MAXALIGN(VARHDRSZ + (3 * sizeof(uint32))
+ sizeof(AttrNumber) + (ndims * sizeof(Oid)));
total_length = (3 * sizeof(uint32)) /* magic + type + nitems */
+ sizeof(AttrNumber) /* ndimensions */
+ (ndims * sizeof(Oid)); /* attribute types */
/* dimension info */
total_length += MAXALIGN(ndims * sizeof(DimensionInfo));
total_length += ndims * sizeof(DimensionInfo);
/* add space for the arrays of deduplicated values */
for (i = 0; i < ndims; i++)
total_length += MAXALIGN(info[i].nbytes);
total_length += info[i].nbytes;
/*
* And finally the items (no additional alignment needed, we start at
* proper alignment and the itemsize formula uses MAXALIGN)
* And finally account for the items (those are fixed-length, thanks to
* replacing values with uint16 indexes into the deduplicated arrays).
*/
total_length += mcvlist->nitems * itemsize;
total_length += mcvlist->nitems * ITEM_SIZE(dim);
/*
* Allocate space for the whole serialized MCV list (we'll skip bytes, so
* we set them to zero to make the result more compressible).
*/
raw = palloc0(total_length);
SET_VARSIZE(raw, total_length);
raw = (bytea *) palloc0(VARHDRSZ + total_length);
SET_VARSIZE(raw, VARHDRSZ + total_length);
ptr = VARDATA(raw);
endptr = ptr + total_length;
/* copy the MCV list header fields, one by one */
memcpy(ptr, &mcvlist->magic, sizeof(uint32));
@ -794,12 +836,9 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
memcpy(ptr, mcvlist->types, sizeof(Oid) * ndims);
ptr += (sizeof(Oid) * ndims);
/* the header may not be exactly aligned, so make sure it is */
ptr = raw + MAXALIGN(ptr - raw);
/* store information about the attributes */
/* store information about the attributes (data amounts, ...) */
memcpy(ptr, info, sizeof(DimensionInfo) * ndims);
ptr += MAXALIGN(sizeof(DimensionInfo) * ndims);
ptr += sizeof(DimensionInfo) * ndims;
/* Copy the deduplicated values for all attributes to the output. */
for (dim = 0; dim < ndims; dim++)
@ -821,7 +860,7 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
* assumes little endian behavior. store_att_byval does
* almost what we need, but it requires properly aligned
* buffer - the output buffer does not guarantee that. So we
* simply use a static Datum variable (which guarantees proper
* simply use a local Datum variable (which guarantees proper
* alignment), and then copy the value from it.
*/
store_att_byval(&tmp, value, info[dim].typlen);
@ -837,17 +876,27 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
}
else if (info[dim].typlen == -1) /* varlena */
{
int len = VARSIZE_ANY(value);
uint32 len = VARSIZE_ANY_EXHDR(DatumGetPointer(value));
memcpy(ptr, DatumGetPointer(value), len);
ptr += MAXALIGN(len);
/* copy the length */
memcpy(ptr, &len, sizeof(uint32));
ptr += sizeof(uint32);
/* data from the varlena value (without the header) */
memcpy(ptr, VARDATA_ANY(DatumGetPointer(value)), len);
ptr += len;
}
else if (info[dim].typlen == -2) /* cstring */
{
Size len = strlen(DatumGetCString(value)) + 1; /* terminator */
uint32 len = (uint32) strlen(DatumGetCString(value)) + 1;
/* copy the length */
memcpy(ptr, &len, sizeof(uint32));
ptr += sizeof(uint32);
/* value */
memcpy(ptr, DatumGetCString(value), len);
ptr += MAXALIGN(len);
ptr += len;
}
/* no underflows or overflows */
@ -856,62 +905,65 @@ statext_mcv_serialize(MCVList *mcvlist, VacAttrStats **stats)
/* we should get exactly nbytes of data for this dimension */
Assert((ptr - start) == info[dim].nbytes);
/* make sure the pointer is aligned correctly after each dimension */
ptr = raw + MAXALIGN(ptr - raw);
}
/* Serialize the items, with uint16 indexes instead of the values. */
for (i = 0; i < mcvlist->nitems; i++)
{
MCVItem *mcvitem = &mcvlist->items[i];
int itemlen = ITEM_SIZE(dim);
/* don't write beyond the allocated space */
Assert(ptr <= raw + total_length - itemsize);
Assert(ptr <= (endptr - itemlen));
/* copy NULL and frequency flags into the serialized MCV */
memcpy(ptr, mcvitem->isnull, sizeof(bool) * ndims);
ptr += sizeof(bool) * ndims;
memcpy(ptr, &mcvitem->frequency, sizeof(double));
ptr += sizeof(double);
/* reset the item (we only allocate it once and reuse it) */
memset(item, 0, itemsize);
memcpy(ptr, &mcvitem->base_frequency, sizeof(double));
ptr += sizeof(double);
/* store the indexes last */
for (dim = 0; dim < ndims; dim++)
{
uint16 index = 0;
Datum *value;
/* do the lookup only for non-NULL values */
if (mcvitem->isnull[dim])
continue;
if (!mcvitem->isnull[dim])
{
value = (Datum *) bsearch_arg(&mcvitem->values[dim], values[dim],
info[dim].nvalues, sizeof(Datum),
compare_scalars_simple, &ssup[dim]);
value = (Datum *) bsearch_arg(&mcvitem->values[dim], values[dim],
info[dim].nvalues, sizeof(Datum),
compare_scalars_simple, &ssup[dim]);
Assert(value != NULL); /* serialization or deduplication error */
Assert(value != NULL); /* serialization or deduplication error */
/* compute index within the deduplicated array */
index = (uint16) (value - values[dim]);
/* compute index within the array */
ITEM_INDEXES(item)[dim] = (uint16) (value - values[dim]);
/* check the index is within expected bounds */
Assert(index < info[dim].nvalues);
}
/* check the index is within expected bounds */
Assert(ITEM_INDEXES(item)[dim] < info[dim].nvalues);
/* copy the index into the serialized MCV */
memcpy(ptr, &index, sizeof(uint16));
ptr += sizeof(uint16);
}
/* copy NULL and frequency flags into the item */
memcpy(ITEM_NULLS(item, ndims), mcvitem->isnull, sizeof(bool) * ndims);
memcpy(ITEM_FREQUENCY(item, ndims), &mcvitem->frequency, sizeof(double));
memcpy(ITEM_BASE_FREQUENCY(item, ndims), &mcvitem->base_frequency, sizeof(double));
/* copy the serialized item into the array */
memcpy(ptr, item, itemsize);
ptr += itemsize;
/* make sure we don't overflow the allocated value */
Assert(ptr <= endptr);
}
/* at this point we expect to match the total_length exactly */
Assert((ptr - raw) == total_length);
Assert(ptr == endptr);
pfree(item);
pfree(values);
pfree(counts);
return (bytea *) raw;
return raw;
}
/*
@ -930,6 +982,7 @@ statext_mcv_deserialize(bytea *data)
MCVList *mcvlist;
char *raw;
char *ptr;
char *endptr PG_USED_FOR_ASSERTS_ONLY;
int ndims,
nitems;
@ -963,8 +1016,9 @@ statext_mcv_deserialize(bytea *data)
mcvlist = (MCVList *) palloc0(offsetof(MCVList, items));
/* pointer to the data part (skip the varlena header) */
ptr = VARDATA_ANY(data);
raw = (char *) data;
ptr = VARDATA_ANY(raw);
endptr = (char *) raw + VARSIZE_ANY(data);
/* get the header and perform further sanity checks */
memcpy(&mcvlist->magic, ptr, sizeof(uint32));
@ -1023,12 +1077,11 @@ statext_mcv_deserialize(bytea *data)
memcpy(mcvlist->types, ptr, sizeof(Oid) * ndims);
ptr += (sizeof(Oid) * ndims);
/* ensure alignment of the pointer (after the header fields) */
ptr = raw + MAXALIGN(ptr - raw);
/* Now it's safe to access the dimension info. */
info = (DimensionInfo *) ptr;
ptr += MAXALIGN(ndims * sizeof(DimensionInfo));
info = palloc(ndims * sizeof(DimensionInfo));
memcpy(info, ptr, ndims * sizeof(DimensionInfo));
ptr += (ndims * sizeof(DimensionInfo));
/* account for the value arrays */
for (dim = 0; dim < ndims; dim++)
@ -1040,7 +1093,7 @@ statext_mcv_deserialize(bytea *data)
Assert(info[dim].nvalues >= 0);
Assert(info[dim].nbytes >= 0);
expected_size += MAXALIGN(info[dim].nbytes);
expected_size += info[dim].nbytes;
}
/*
@ -1069,15 +1122,18 @@ statext_mcv_deserialize(bytea *data)
map[dim] = (Datum *) palloc(sizeof(Datum) * info[dim].nvalues);
/* space needed for a copy of data for by-ref types */
if (!info[dim].typbyval)
datalen += MAXALIGN(info[dim].nbytes);
datalen += info[dim].nbytes_aligned;
}
/*
* Now resize the MCV list so that the allocation includes all the data
* Now resize the MCV list so that the allocation includes all the data.
*
* Allocate space for a copy of the data, as we can't simply reference the
* original data - it may disappear while we're still using the MCV list,
* e.g. due to catcache release. Only needed for by-ref types.
* serialized data - it's not aligned properly, and it may disappear while
* we're still using the MCV list, e.g. due to catcache release.
*
* We do care about alignment here, because we will allocate all the pieces
* at once, but then use pointers to different parts.
*/
mcvlen = MAXALIGN(offsetof(MCVList, items) + (sizeof(MCVItem) * nitems));
@ -1138,7 +1194,7 @@ statext_mcv_deserialize(bytea *data)
/* just point into the array */
map[dim][i] = PointerGetDatum(dataptr);
dataptr += info[dim].typlen;
dataptr += MAXALIGN(info[dim].typlen);
}
}
else if (info[dim].typlen == -1)
@ -1146,14 +1202,22 @@ statext_mcv_deserialize(bytea *data)
/* varlena */
for (i = 0; i < info[dim].nvalues; i++)
{
Size len = VARSIZE_ANY(ptr);
uint32 len;
memcpy(dataptr, ptr, len);
ptr += MAXALIGN(len);
/* read the uint32 length */
memcpy(&len, ptr, sizeof(uint32));
ptr += sizeof(uint32);
/* the length is data-only */
SET_VARSIZE(dataptr, len + VARHDRSZ);
memcpy(VARDATA(dataptr), ptr, len);
ptr += len;
/* just point into the array */
map[dim][i] = PointerGetDatum(dataptr);
dataptr += MAXALIGN(len);
/* skip to place of the next deserialized value */
dataptr += MAXALIGN(len + VARHDRSZ);
}
}
else if (info[dim].typlen == -2)
@ -1161,10 +1225,13 @@ statext_mcv_deserialize(bytea *data)
/* cstring */
for (i = 0; i < info[dim].nvalues; i++)
{
Size len = (strlen(ptr) + 1); /* don't forget the \0 */
uint32 len;
memcpy(&len, ptr, sizeof(uint32));
ptr += sizeof(uint32);
memcpy(dataptr, ptr, len);
ptr += MAXALIGN(len);
ptr += len;
/* just point into the array */
map[dim][i] = PointerGetDatum(dataptr);
@ -1181,9 +1248,6 @@ statext_mcv_deserialize(bytea *data)
/* check we consumed input data for this dimension exactly */
Assert(ptr == (start + info[dim].nbytes));
/* ensure proper alignment of the data */
ptr = raw + MAXALIGN(ptr - raw);
}
/* we should have also filled the MCV list exactly */
@ -1192,7 +1256,6 @@ statext_mcv_deserialize(bytea *data)
/* deserialize the MCV items and translate the indexes to Datums */
for (i = 0; i < nitems; i++)
{
uint16 *indexes = NULL;
MCVItem *item = &mcvlist->items[i];
item->values = (Datum *) valuesptr;
@ -1201,27 +1264,35 @@ statext_mcv_deserialize(bytea *data)
item->isnull = (bool *) isnullptr;
isnullptr += MAXALIGN(sizeof(bool) * ndims);
memcpy(item->isnull, ptr, sizeof(bool) * ndims);
ptr += sizeof(bool) * ndims;
/* just point to the right place */
indexes = ITEM_INDEXES(ptr);
memcpy(&item->frequency, ptr, sizeof(double));
ptr += sizeof(double);
memcpy(item->isnull, ITEM_NULLS(ptr, ndims), sizeof(bool) * ndims);
memcpy(&item->frequency, ITEM_FREQUENCY(ptr, ndims), sizeof(double));
memcpy(&item->base_frequency, ITEM_BASE_FREQUENCY(ptr, ndims), sizeof(double));
memcpy(&item->base_frequency, ptr, sizeof(double));
ptr += sizeof(double);
/* translate the values */
/* finally translate the indexes (for non-NULL only) */
for (dim = 0; dim < ndims; dim++)
if (!item->isnull[dim])
item->values[dim] = map[dim][indexes[dim]];
{
uint16 index;
memcpy(&index, ptr, sizeof(uint16));
ptr += sizeof(uint16);
ptr += ITEM_SIZE(ndims);
if (item->isnull[dim])
continue;
item->values[dim] = map[dim][index];
}
/* check we're not overflowing the input */
Assert(ptr <= (char *) raw + VARSIZE_ANY(data));
Assert(ptr <= endptr);
}
/* check that we processed all the data */
Assert(ptr == raw + VARSIZE_ANY(data));
Assert(ptr == endptr);
/* release the buffers used for mapping */
for (dim = 0; dim < ndims; dim++)

2
src/include/catalog/catversion.h
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@ -53,6 +53,6 @@
*/
/* yyyymmddN */
#define CATALOG_VERSION_NO 201907051
#define CATALOG_VERSION_NO 201907052
#endif

1
src/include/statistics/extended_stats_internal.h
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@ -36,6 +36,7 @@ typedef struct DimensionInfo
{
int nvalues; /* number of deduplicated values */
int nbytes; /* number of bytes (serialized) */
int nbytes_aligned; /* size of deserialized data with alignment */
int typlen; /* pg_type.typlen */
bool typbyval; /* pg_type.typbyval */
} DimensionInfo;

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